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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G22430.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
Trihelix |
Protein Properties |
Length: 335aa MW: 36303.8 Da PI: 10.1782 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G22430.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 18 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ s++ ++++l+
LPERR01G22430.1 18 CWSEGETEALVQAWGRRYVDLNRGSLRQPQWREVAEAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWIFYRDLD 104
7*******************************************999999********************9998775......4588888876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MDGKPPPPNP NLPYREDCWS EGETEALVQA WGRRYVDLNR GSLRQPQWRE VAEAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWIFY RDLDMLVGPT LSATGAAGGG 120 GGGGGGKKPS PPTALPMMRR RLESPSRSPS PPSPTPAMAL PLPNYRQASN LPSAGLLFNK 180 MAAAAAAESD SEDGYNNPNN NNYADYEDDE GSQQSASRSL SSRSGGVAAG GGAGGGVSSN 240 KRKRGGGGGF GELARAVETF AEMYERMEFA KQRHAEEMER QRIKFLKDLE LKRMQAFVDV 300 QLQLAKAKHR KHPDGASEVL MSLAALPFLS TPAYL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK099396 | 0.0 | AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence. |
GenBank | AP003264 | 0.0 | AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 5e-27 | sequence-specific DNA binding transcription factors |