PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G22080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 524aa    MW: 54312.3 Da    PI: 8.229
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G22080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-1668128257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  LPERR01G22080.1  68 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 128
                      89*****************99*************************************995 PP
2Wus_type_Homeobox110.21.1e-3567129264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k
    LPERR01G22080.1  67 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 129
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89664129IPR001356Homeobox domain
SMARTSM003893.6E-666133IPR001356Homeobox domain
SuperFamilySSF466898.55E-1166128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-667132IPR009057Homeodomain-like
CDDcd000862.08E-667129No hitNo description
PfamPF000462.5E-1468127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MASSNRHWPS MFRSKHATQL PWQTQPDMAG SPPPLLSGSS TGSVGGGAYS LKSSPFSSVG  60
EERVPDPKPR WNPRPEQIRI LEAIFNSGMV NPPRDEIPRI RMQLQEYGQV GDANVFYWFQ  120
NRKSRSKNKL LRTPGSGGAR AGTRGATATA TSPRGVAPPF TPPPIMPQPV QQQLVMSPVA  180
APTSSSSSSS DRSSGSSKPV AKPPATSTRA MCSATAAMDL LSPLAAPCHR QMLYEGQPLD  240
LPAPAPATKV PDEPIFLQWP QSPCLSAVDL GAAMIGAGNQ HMHLPAAPVH QQPPPPSSPA  300
SGMFRGLCND VTAPNKVCAW SAGIGQHWSS SGADQLGLGK TIAAVAREEA HPHDDATKLG  360
LLQYGFGIST TPAVNVDVGS PDPGVLPPVP PSPSQDADVT VASVVAAAGM ADFASSAMST  420
GAVANNQLQG LADFGLVSTG AGAGAAVSTG STAVSAAAVL AFTSFGSAVG SFLYPATRFN  480
LRHQFGDAAV LFRYKGDSTE AVRLDDSGFT VEPLQPGAVY LVLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G22080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037601e-113AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0149571e-113AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-113CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875666.11e-176WUSCHEL-related homeobox 7
SwissprotQ0JKK61e-177WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A0D9V3W80.0A0A0D9V3W8_9ORYZ; Uncharacterized protein
STRINGLPERR01G22080.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-46homeobox-3