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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G20900.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
C3H |
Protein Properties |
Length: 334aa MW: 36103.5 Da PI: 7.9554 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G20900.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 47 | 4.1e-15 | 260 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + +tG C+yG++C+FaHg
LPERR01G20900.1 260 FKTELCNKWEETGDCPYGNQCQFAHG 285
79***********************9 PP
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2 | zf-CCCH | 18.9 | 2.8e-06 | 298 | 323 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ Cr +++ C+yG rC+F H+
LPERR01G20900.1 298 YKTAVCRMVLAGDVCPYGHRCHFRHS 323
9**********55**********998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
GO:0003729 | Molecular Function | mRNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MQEALVSPVR SALELKPFAF GDQRLASSPR YFAGGEDALY RCSSPFSPSF GFSSPSPLAT 60 SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAVAAEEA 120 AALRRENAEL RVANSDLTRR LALLSGKHSA AVAVADEICR LGRLGEQKTA PASKESTPQK 180 LAVLPKSISV RSTSYLKLNQ QAQTAATPDA HNRKPRTSSN PTNPSSQRAY DGGKKGEEQK 240 EQAAGADDAA ELEVYNQGMF KTELCNKWEE TGDCPYGNQC QFAHGVAELR PVIRHPRYKT 300 AVCRMVLAGD VCPYGHRCHF RHSLTPAERL LLRP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108658 | 0.0 | AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence. |