![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G20500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 1790aa MW: 164308 Da PI: 9.9642 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.4 | 2.9e-27 | 1596 | 1647 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l C ACgCHR+FHRr+++ LPERR01G20500.1 1596 RSRYHECLRNHAAASGGHVVDGCGEFMPA----STEDPLACEACGCHRSFHRRDPS 1647 689*************************9....5678****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-26 | 1581 | 1645 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-22 | 1597 | 1645 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-23 | 1598 | 1645 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.501 | 1599 | 1645 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 1708 | 1779 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.62E-15 | 1711 | 1778 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-22 | 1718 | 1773 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1790 aa Download sequence Send to blast |
MVKFHSVNLI LAVLLISLWT VTPVLSYSEQ DYGRRVKNEK KPDHDKDMSK EYGKRVEHHV 60 NQAAADAALV LKAKEEIAKR TAKHIQSSIA SARVAIHIKE EMLEKTAEVM SRMAGEVSVQ 120 LSKVAKEHTK VAVGDIAAAL KYKQEILKRA AERVKDVSED VNMANKAKQE ILQKVAHDLG 180 KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGV SGGARVHISG GIHGNIHFGA 240 GARAGANAAA SAGAEAKASK SGSSNVGGNA EEYVGGSGSA SEGTKVEGNG NAKAGASAGV 300 GISGGAKVGG GVGGNAGVGS NANVGLGVGA SAGISESAKV GAGIGGSGGV GSNANANAHA 360 GLGVGISGGA KVGGGVGGNA GAGSNTDGYT NAGAGISRST KVGGAVEENA GVGSNAHANA 420 GLGASVGAGI SGGAKVGRGV GGNAGIGSNA NAGLNAGADI SGNAKVGAEM GGNVGVGSNA 480 NAGLGAGVAV SGGAKVGGGI GGNMGAGSNA NANVGLGAGV SASGGAKVGG GVGGNASVSA 540 NANGYAGVGA GISGSGKVGG AIEGNAGVGS NAKVNTGLGA GVGVGISGGA KVGAGVGGNA 600 DAGSNANASL GVSAGVSGSA KVGADAGGNL GVGSNANAGL GAGVGISGGA KVGGGIGGSV 660 GAGSNANVGA DISGNSKVGG AVEGNAGAGS KANANVGLSA SAAISGGAKV GGGISGNAGV 720 GSNANAGLGV GAGISGSAKV GAGIGGNVGV NSNANVGIGA GAGISGGAKV DSDIGGSASV 780 GSNANAGLVG AGIGISGGTK VGGGIGGNAG VSSDADGYAK TGAEKTKNTK AGSGENGGIG 840 SNANTNVGFD AGAGISGGAK VGGGTGGNAG VDSNANANAN ADLSAGVGIS AGAKAGGAIG 900 GNMAGVVNAN AGLGASASKD AKIGGGIGGN IRSGGNVNAG VNAGLGVGVS KDAKIGGDTG 960 GNVGGGGNVK ADANVDLGAS AYKDTKIGTE AKGNIVGGGN ANAGIGASIS KEAKINGGIE 1020 GNVGDGGNAN AGANAGIGAS IYKEAKINGG IGGNTGGGGN ANAGLGASVG ISGGAKIGGN 1080 IKENVNGSSN GNDEKSGANK KSKDSEAYVG GKSSTNVGAN AGVGISGGAK IGGNVGGNAG 1140 GNANGGVGAN AGVSGDSKVG GDIRGNLGGG DKSKTNVGAN GGLGISGDAK VGGSAGGNIG 1200 GNANSGVVAN AGVGAGVGFS GGARIGAGIG GNVGGNGNAN ADVGSSPNVY GNNKVGGGVG 1260 GKAGASANVG ANVGIGAGFG VSGGGRAGAS VGENGNVGIG GNANAGANVA GGTSLGAHFG 1320 ASKHVGVGFG ANAGIGGGFN FGASGKANAG ANSAIGGSGG SNTGIGASAS KSVGAGVDVG 1380 AGSNAGIGAS ASKSVGVDAG AGSNTGIGAS ASKSVGAGVD AGAGSNAGIG ASASKSVGAG 1440 IGVGAGSNVG IGASASKSVG AGVGVGADSN AGVGVSASKS VGAGAGIGAY ANGGIGASAS 1500 KSVSGGADAD AKVGGNDGVG ASGKDKTDVE EGASKEKIDG EEEASKSAGA TANKGYLHVR 1560 GMELSGHDED AGYAGGGCSP PTPLHRGPAA ETTTTRSRYH ECLRNHAAAS GGHVVDGCGE 1620 FMPASTEDPL ACEACGCHRS FHRRDPSPAR AGAAPLLLPL HRPASVNPRA PALLLTPAGS 1680 KQGLPLPVYG TTPSSGTGTT TASSSEERLR PSPAPARRQS RTTFTREQKE QMLAFAESVG 1740 WRIQRQEEAT VEQFCTQVGV RRQAFKVWMH NNKHSSKQKQ QQQLQENRQE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G20500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP007251 | 1e-180 | AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14. | |||
GenBank | AP014957 | 1e-180 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-180 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638769.1 | 0.0 | fibroin heavy chain | ||||
TrEMBL | A0A0D9V3B7 | 0.0 | A0A0D9V3B7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G20500.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-34 | homeobox protein 22 |