PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 339aa    MW: 37112.9 Da    PI: 6.6515
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33261172102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll 
  LPERR01G20050.1  26 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLP 110
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k+
  LPERR01G20050.1 111 RIVRRKK 117
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3621115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3422115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-162649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-2926115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-167789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCGGDGQ QQTAPFVAKT YQMVCDPRTD ALVRWGRDNN SFVVVDPAAF  60
SQLLLPCFFK HGNFSSFVRQ LNTYGFRKVH PDRWEFAHES FLRGQTHLLP RIVRRKKRGE  120
GNAGGGAASC SFGGFSGGEQ NEAAATGCLG MLGELEDADD VSGKEAALFE EVQRLRHEQT  180
AIGEELARMS QRLQATERRP DQLMSFLAKL ADDPNAVTGH LLEQAAERKR RRQHLPSHEP  240
TVSPLPPAPP PQPLLALAGA ASAMDCPDAA WQWTDHHHHH RYHHHQIKPM MFPSLEASCG  300
GVQQVPELGG GGVMGLTLTD GEAKVEPPFP FCLLGQAFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231311516129Heat shock factor protein 1
5d5v_B5e-231311516129Heat shock factor protein 1
5d5v_D5e-231311516129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644390.11e-172PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-169HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A0D9V3420.0A0A0D9V342_9ORYZ; Uncharacterized protein
STRINGLPERR01G20050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]