PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G18090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 297aa    MW: 32087.5 Da    PI: 8.6751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G18090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT++E+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  LPERR01G18090.1  5 KQRWTADEEAALKAGVAKHGTGKWRTILRDPEftavlRLRSNVDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.259161IPR017930Myb domain
SuperFamilySSF466895.23E-15258IPR009057Homeodomain-like
SMARTSM007177.1E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-13556IPR009057Homeodomain-like
PfamPF002491.7E-8556IPR001005SANT/Myb domain
CDDcd116602.32E-18656No hitNo description
Gene3DG3DSA:1.10.10.107.3E-17122195IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-16123202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.4E-13125188IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.47125193IPR005818Linker histone H1/H5, domain H15
PfamPF005389.8E-10130186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQRWTA DEEAALKAGV AKHGTGKWRT ILRDPEFTAV LRLRSNVDLK DKWRNLSVTA  60
GGYGSRERAR MALKGGKRGS MVVAGPIDVD EKIPDNNDNI IIDAQPLAVV AEPMQLESSP  120
EKDKSVARLD DLILEAIKEI KESSGSNKAA ISAYIEEQYW PPNGFDKLLL AKLKAMVATG  180
KLIKVNQKYR IAPSSYSSGG KSTKMYSTGE MDIGNNNVKQ LSKPQVDAEL DKMKSMSKEE  240
AAAFAARAVA EAEAAIAEAE EAARAAEAAE AEADAAKAFL DAVVFTMRNR NPASAVY
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G18090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308630.0CT830863.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110E03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613057.11e-153single myb histone 2
SwissprotB4FT401e-115SMH2_MAIZE; Single myb histone 2
TrEMBLA0A0D9V2F40.0A0A0D9V2F4_9ORYZ; Uncharacterized protein
STRINGLPERR01G18090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-58telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]