 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LPERR01G18090.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
Family |
MYB_related |
Protein Properties |
Length: 297aa MW: 32087.5 Da PI: 8.6751 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G18090.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 40 | 9e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
++rWT++E+ l+ +v+++G+g W+tI r R+ ++k++w+++
LPERR01G18090.1 5 KQRWTADEEAALKAGVAKHGTGKWRTILRDPEftavlRLRSNVDLKDKWRNL 56
79***********************************99***********96 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006334 | Biological Process | nucleosome assembly |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0009651 | Biological Process | response to salt stress |
GO:0009723 | Biological Process | response to ethylene |
GO:0009733 | Biological Process | response to auxin |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0000786 | Cellular Component | nucleosome |
GO:0005730 | Cellular Component | nucleolus |
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
GO:0033613 | Molecular Function | activating transcription factor binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0070491 | Molecular Function | repressing transcription factor binding |
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MGAPKQRWTA DEEAALKAGV AKHGTGKWRT ILRDPEFTAV LRLRSNVDLK DKWRNLSVTA 60 GGYGSRERAR MALKGGKRGS MVVAGPIDVD EKIPDNNDNI IIDAQPLAVV AEPMQLESSP 120 EKDKSVARLD DLILEAIKEI KESSGSNKAA ISAYIEEQYW PPNGFDKLLL AKLKAMVATG 180 KLIKVNQKYR IAPSSYSSGG KSTKMYSTGE MDIGNNNVKQ LSKPQVDAEL DKMKSMSKEE 240 AAAFAARAVA EAEAAIAEAE EAARAAEAAE AEADAAKAFL DAVVFTMRNR NPASAVY
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CT830863 | 0.0 | CT830863.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110E03, full insert sequence. |