PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 26685.8 Da PI: 8.9642 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 130 | 188 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+ LPERR01G17790.1 130 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 188 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 117 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 123 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.35 | 125 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 130 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 131 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSSYSSLLSL SPGEYHHQIG GGSDDMAVAA AAVSSYLSFD DMEDIVGGYY DPPKADFHSK 60 HHEPTSLLQG ADEYKNGEMR EQSVAAVVMS SSGLSNHGKI NKVPTPAVGH AKSKNGSKIA 120 FKTRSEVDVL DDGYRWRKYG KKMVKNSPNP RNYYRCSSEG CRVKKRVERA RDDARFVVTT 180 YDGVHNHPAP LHNPRLQYNQ HGCAGGGVGY SVIGGPAAAA GGRRLGLEEA EVIALFRGTT 240 ATSLQLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 121 | 190 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 121 | 190 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108522 | 1e-120 | AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence. | |||
GenBank | AY341846 | 1e-120 | AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds. | |||
GenBank | CT831367 | 1e-120 | CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635031.1 | 1e-81 | WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A0D9V2C0 | 0.0 | A0A0D9V2C0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17790.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-37 | WRKY DNA-binding protein 50 |