PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR01G17380.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 105aa MW: 11486.1 Da PI: 6.4992

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73.6	3.7e-23	17	99	2	75
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeer.....edamsslvyeAearardPvyG 75 Ca+C++++r+C++dC lap+fpa++pk+f+++ ++FG++++l+ l+a + e+r ++ m+ +vy A+ar++dP + LPERR01G17380.1 17 CAVCAHQGRTCPPDCRLAPHFPADKPKRFEYAYQIFGMRRILRALEADaaglDAETRrreygNIGMAGIVYTADARVEDPGLS 99 *******************************************98545554454446777889*************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.188	15	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-18	17	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MADPAAPLAT HEGHETCAVC AHQGRTCPPD CRLAPHFPAD KPKRFEYAYQ IFGMRRILRA 60 LEADAAGLDA ETRRREYGNI GMAGIVYTAD ARVEDPGLSV FLIAN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640499.1	2e-15	LOB domain-containing protein 22
TrEMBL	A0A0D9V268	2e-71	A0A0D9V268_9ORYZ; Uncharacterized protein
STRING	LPERR01G17380.1	4e-72	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16910	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-12	LOB domain-containing protein 27