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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 53147.1 Da PI: 8.321 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.7e-06 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H LPERR01G17290.1 90 FVCEICGKGFQRDQNLQLHRRGH 112 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-7 | 89 | 112 | No hit | No description |
SMART | SM00355 | 0.012 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 90 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 133 | 163 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.4E-7 | 163 | 188 | No hit | No description |
SMART | SM00355 | 160 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MFHHHLQQQQ QQGLFLLEET DTDAAASADQ QQESSMSNLT SSASAAAPPL SSAAAAANNN 60 KRKRSLPGNP DPEAEVVALS PATLMATNRF VCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RGTSKEAVRK KVYICPEASC VHHDPSRALG DLTGIKKHFF RKHGEKKWKC DKCSKKYAVH 180 SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALT EESAKAIGVG AMPAAAMAAA 240 PGHHHHHPLL FSAPPVMAHH DLAALQDQHH HHDVMQSPHQ QQQQQLQSCG YGAVKPEMAP 300 WPAMNYDSHH PLLTQPLCNA SAPQSSATSA APPPPATAAA AAHLSAXCVQ PKHPYKNPKT 360 GAHYAHQMAG AGGGATFGLG LSCLNNNEGG GNGLAAAAGV MAQMARAASS HGRNGEDGGG 420 GGGGTGGGGG DGMTRDFLGL RAFSHRDMLL AGFDSSYVNA ATNAGAMACY EPPQHGQPQN 480 QQQQHHGSSN EPWHGMGGHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-34 | 164 | 225 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-34 | 164 | 225 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289209 | 0.0 | AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969529.1 | 0.0 | protein indeterminate-domain 7 | ||||
TrEMBL | A0A0D9V259 | 0.0 | A0A0D9V259_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17290.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-93 | C2H2-like zinc finger protein |