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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C3H | ||||||||
Protein Properties | Length: 799aa MW: 85224.1 Da PI: 6.1717 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.8 | 5.9e-06 | 570 | 592 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H LPERR01G17280.1 570 KSKPCTHFAR-GSCLKGDDCPYDH 592 6789******.************* PP | |||||||
2 | zf-CCCH | 30.7 | 5.3e-10 | 598 | 619 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ LPERR01G17280.1 598 PCHNFMENGMCIRGDKCKFSHV 619 7********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.845 | 539 | 566 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 540 | 565 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-5 | 540 | 564 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 567 | 593 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 568 | 594 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.281 | 568 | 595 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 570 | 593 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 596 | 620 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 597 | 624 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-7 | 598 | 619 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 598 | 621 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 598 | 618 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MVLYKQATPF YSASCSKGPI TCSIEFVFVL TLQKIYSGLS QNKAVIYSGL VGSGPRTPVC 60 RLSFPPLRWV FLFLLSSRRP VAAAADEHPR RDHAPLGTLN PNPNPDTSAP FAMEEPSLAP 120 PRDPLAAAPS AALSRRRAHL DSASYRALSR LFSHCLHLHP PPHAARSDAD GERAAAAITP 180 PGGSGGLPSG GSPPPKDLVC DGGKDLEVEV ALGNPTPHET PSASVSPDAA ANPNTDPGVA 240 PEGTPESGVA GVERVESVEE VVLAGSTSGK DGADGEELGA GSGLMGDDEA LRSMQACLDG 300 DNNELVSEIV GNDDEQLQLD AMMTNLSGRI DDASAGLMSA QSGGASGGKL QDDGRVAEEV 360 KELGAGIGYD RSVVSSDHGS IDGCFEEGEI EGDMQNLDAD DSGNSEHEGE DVAGEELEQD 420 FVSRRKGENE SCGQVIKSHS LHLIPQKGNG DFALNKQCDS NDGSQMHVAR AQAVSYDEVV 480 DWNETPLPDD KALKQGNKRK RAFTEERKAK KTKNKRIKRA LQREAEGVKR LKLQPVIKPK 540 VVQDCRFYLL GKCQQGNMCK FSHDSTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH 600 NFMENGMCIR GDKCKFSHVT PTAEAPSTVD AKNSNASSVP EKTNCREQPS SQKISTVYSG 660 EPTSAPTKHH SILKNLAGLS GNAQKIPVHV PKGIQFLPFN KASVCIPKSI LHRDVVSTEK 720 HKEPSGSQGE NIANHNGLHS APLLDEKNTS KQANLHPCSE PKKYSLPTTA VVVPSSASTQ 780 HEVSEASRIL QEFLFGAGN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622402.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_015622403.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A0D9V257 | 0.0 | A0A0D9V257_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17280.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 2e-06 | C3H family protein |
Publications ? help Back to Top | |||
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