PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G14580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 308aa    MW: 32458 Da    PI: 5.1488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G14580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-06164211455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      a+  + + RR+r+ ++ +eL +l+P a    sk +s ae L+ A+ ++k Lq
  LPERR01G14580.1 164 AKAVVAKERRRRVSDKTAELLRLIPGA----SKLNSTAEKLRAATLHVKLLQ 211
                      56677899******************9....555**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.42160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-7162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-4163215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-4163214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSPPTADRQV FDGRRFRLAA AAAGGGGMGG DDETEVADAL RELADDPTGG VGIVELLGLG  60
SLPGEEKGGG GGGVEHLAKR PRVACDGEFV LPPLPMPMPE VASGFIPTPA AAAEVVVPPP  120
YWLVVPELPT PTTRHWQWQA RRPDAAALVR GALAAEGTNS GATAKAVVAK ERRRRVSDKT  180
AELLRLIPGA SKLNSTAEKL RAATLHVKLL QAQVGILALI PTTAAGEEEE EEEEEENAMP  240
SMAMAAEEKR TMRALLASSG VQERLAGEGK CLVPTSLVRA IAGDESSYNP ILSRDLNRFI  300
NSLQKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G14580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318081e-33AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-33AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558751e-33BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465928.12e-37uncharacterized protein LOC8061437
TrEMBLA0A0D9V1770.0A0A0D9V177_9ORYZ; Uncharacterized protein
STRINGLPERR01G14580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-16bHLH family protein