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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G12180.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
Trihelix |
Protein Properties |
Length: 481aa MW: 50723.5 Da PI: 6.7555 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G12180.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 73.7 | 3e-23 | 29 | 142 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67
+Wt+++v++Li+++ +++++ g +kk++W++vs++m+erg+ +sp+qC++k+++lnkryk++ +
LPERR01G12180.1 29 KWTDEMVRLLINVVYSVGDDGDGGVaaaaggggggtkggaaahgkgaaaaqqQKKGKWKSVSRAMMERGYMVSPQQCEDKFNDLNKRYKRVVDL 122
7************997766666543334455666666666777777777777****************************************** PP
trihelix 68 ekkr.tsessstcpyfdqle 86
+++ +++++++++++d ++
LPERR01G12180.1 123 LGRGtACKVVENHALLDAMD 142
****55************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MGMGNGAAKG GGGGGVVPGS AGCPWTRMKW TDEMVRLLIN VVYSVGDDGD GGVAAAAGGG 60 GGGTKGGAAA HGKGAAAAQQ QKKGKWKSVS RAMMERGYMV SPQQCEDKFN DLNKRYKRVV 120 DLLGRGTACK VVENHALLDA MDELPPKAKD EARKLLSSKH LFFREMCAYH NSGANAHGAP 180 HGGAPHGGSG GGGDACFHHP PPASMAAAAA ASSAARQAAA FAPSPGMKDS SAGADDDDDD 240 SDDVPSSNDI DEDDDDDDDD DEVMKHRTGS GGIQIYGSSH RLHHHHHHNG HHKRRRHGDD 300 VSSAGAGGDD DDDAATGGRK RSRGIASAGG DEDDHGPSPV QQLQSELAAA TAAAGDPQQV 360 RQWVRRRAVE VEEQQVAHDV RAYHLERQRL KWERFRANKE RDMERARLRN DRVRIDGRRM 420 LLLLRQKDLD FDIAEANSSS VDHLPTSSAG PPLSAAAALH PHHQQQIGSS PSAAAAAGHP 480 N
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G10040.1 | 8e-44 | sequence-specific DNA binding transcription factors |