 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR01G11480.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
MYB |
| Protein Properties |
Length: 281aa MW: 31076.4 Da PI: 6.1812 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR01G11480.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd l+ v+ +G g+W+ +ar g++Rt+k+c++rw++yl
LPERR01G11480.1 20 RGPWTVEEDAVLAGHVAAHGEGRWNEVARAAGLRRTGKSCRLRWLNYL 67
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 53.3 | 6.2e-17 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++
LPERR01G11480.1 73 RGDFSPQEQLLILELHFRWGNR-WSKIAQHMP-GRTDNEIKNYWRT 116
899*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDLSCGWNSA AAADQEEIRR GPWTVEEDAV LAGHVAAHGE GRWNEVARAA GLRRTGKSCR 60
LRWLNYLRPD VRRGDFSPQE QLLILELHFR WGNRWSKIAQ HMPGRTDNEI KNYWRTRVQK 120
HAKQLGVDVA SARFRDVMRH LWMPRLVERI HAAAAAAAAT TTEHATPVDV CHSPDPSTTT 180
SCTAGTSSST STSMSVPHNH HLTAMTTSVA EAAADWSGSE QCGSASGGIS DDMFEGSWSE 240
LLARAYGDDG ADSSLLPDMH MAAETGEGWW SFEDIWSQQQ Y
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK241615 | 1e-173 | AK241615.1 Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence. |
| GenBank | AP002883 | 1e-173 | AP002883.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0487H02. |
| GenBank | AP003140 | 1e-173 | AP003140.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13. |
| GenBank | AP014957 | 1e-173 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
