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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G11210.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 376aa MW: 40735.8 Da PI: 6.7564 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G11210.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 25.5 | 2.3e-08 | 182 | 224 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR+r+ ++++ L l+P++ +K + a++ A+eYI++L
LPERR01G11210.1 182 KKEKQRRQRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 224
57*********************9.....8****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MYHPQCELLM PHESLELDVG QSSSSSHLAA AAMPAELNFH LLHSLDAAAA SHHPTVDYFF 60 GGGGGADQPP PSVMVQPYDQ LVSAAAPHHQ TTMTMLRDYY AGGHYPPAAA TEAYFRGGPR 120 TGSSSLVFGP ADDDNSSAYM VGPFETSSPT PRSGGSRKRS RAAAAAAFFH GGVGPAVNGV 180 EKKEKQRRQR LTEKYNALML LIPNRTKEDR ATVISDAIEY IQELGRTVEE LTLLVEKKRR 240 RREMQGDVVD AAPSAMDQAA ESSEGEVAAA AAAAMVAAAR QQPIRSTYIQ RRSKETFVDV 300 RIVEDDVNIK LTKRRSDGCL AAASRALDDL RLELVHLSGG KIGDCHIYMF NTKIHPRSPV 360 FASAVASRLI EVVDDY
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK106850 | 0.0 | AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence. |