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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G10950.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 715aa MW: 75817.7 Da PI: 8.0872 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G10950.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 49.2 | 9.4e-16 | 498 | 544 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq
LPERR01G10950.1 498 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 544
5*************************8.....6******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009704 | Biological Process | de-etiolation |
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
GO:0010017 | Biological Process | red or far-red light signaling pathway |
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 715 aa
Download sequence Send
to blast |
MRRLSLLIYL LVHSVSPRSL LGPPTQPRRL SLLFSLIPHA DQQFSAARDF SLPRFTFYFL 60 SLLFSFGFGF HERELTLTSH PAQLRKHGLD CIRLVGVLQL QTRSPSLLDL FSLLGLQAQM 120 SDGNDFAELL WENGQAVVHG RRKHAPPAFP PFGFGGGGGG GSSSNRAQER HPGGGDAFAK 180 AGNFVALGMG AAVHDFTPTF GGAAHDNGDD DAVPWIHYPI IDDDDGAAAP ALAANDYGSD 240 FFSELQAAAA AAAAAAAPPN DLGSLPTNNR NAPIATTCSR EPPSKETHGG GLSVPTTQAS 300 PQLAAGAAKL PRPSGSGSGD GVMNFSLFSR PAVLARATLQ SAQRTQGTDK ASNVTAASNR 360 VESTVVQTAS GARSGPAFAA DQRAWPPQPK EMPFASTAAA APVATAVNLQ HEIGSDRAGR 420 NIGVHKNEGR KAPEATVATS SVCSGNGAGN DELWRQHKRK RQAQAECSAS QEDDIDDEPS 480 ALRRSATRST KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL 540 KTLQLQVQMM SMGTGLCIPP MLLPAAMQHL QIPPMAHFPH LGMGLGYGMG VFDMNNTGTL 600 PMPHMPGAHF PCPMIPGASP QGLGIPGTNT LPMFGVPGQA VPSSAPSIPP FPSLAGLHVR 660 PNGVPQVSGA MANMVQDQQQ GIGNQQQQCL NKEAIQGANT NDPQMQIIMQ VLINK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK102252 | 0.0 | AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence. |
Publications
? help Back to Top |
- Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]
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