PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G09130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 692aa    MW: 77112.6 Da    PI: 8.4105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G09130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08519540627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C+ f rtGtCk+Gd+C++ H++
  LPERR01G09130.1 519 CQQFVRTGTCKFGDSCRYFHPK 540
                      ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.208.2E-2665172No hitNo description
CDDcd14137067359No hitNo description
SuperFamilySSF561124.05E-8971382IPR011009Protein kinase-like domain
PROSITE profilePS5001144.472356IPR000719Protein kinase domain
SMARTSM002201.1E-9072356IPR000719Protein kinase domain
PfamPF000692.5E-6572356IPR000719Protein kinase domain
PROSITE patternPS00107078102IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.7E-59173368No hitNo description
PROSITE patternPS001080193205IPR008271Serine/threonine-protein kinase, active site
SMARTSM004513.5E-4458493IPR003604Zinc finger, U1-type
SuperFamilySSF576671.87E-13459501No hitNo description
PfamPF062203.3E-9460492IPR013085Zinc finger, U1-C type
SuperFamilySSF902292.75E-6513541IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4513540IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6518540IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657518541IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6518540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0009933Biological Processmeristem structural organization
GO:0042538Biological Processhyperosmotic salinity response
GO:1901002Biological Processpositive regulation of response to salt stress
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGSVGVAPSG LKNSSSTSMG AEKLPDQMND LKIRDDKEVE ATIINGKGTE TGHIIVTTTG  60
GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL  120
DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI  180
CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA  240
PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM  300
NPNYTEFKFP QIKAHPWHKV FHKRLPPEAV DLVSRLLQYS PNLRCTAVEA LVHPFFDELR  360
DPNARLPNGR FLPPLFNFKP HELKGIPSDV MAKLIPEHAK KQCSYAGICS ENVTFSALVC  420
SVNEDALPRV ITTPRGGEKR TGERTQGGVA GERGEMPLGK YYCDYCEKQF QDTPAARKRH  480
LDGSQHQRAR ALWYDAVRRQ EINGGGGARA PHLLQAGVCQ QFVRTGTCKF GDSCRYFHPK  540
TDPVNPGSVP SGNILGGHTS WDNLPPSLRP PPEGDRLHPS CLAIDSRPPQ ARDQPPFFLH  600
IIIGEKSATL VHRQMLRTRL LCLLAADELP LLDVDANDDG SQQQEEGSHW LLVSGKSALL  660
ARHLLCFCKE VFAGWSQKGC DKGFGCSGAQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4j1r_A1e-17224041391Glycogen synthase kinase-3 beta
4j1r_B1e-17224041391Glycogen synthase kinase-3 beta
4j1r_C1e-17224041391Glycogen synthase kinase-3 beta
4j1r_D1e-17224041391Glycogen synthase kinase-3 beta
4j71_A1e-17224041391Glycogen synthase kinase-3 beta
4j71_B1e-17224041391Glycogen synthase kinase-3 beta
5hln_A1e-17224041391Glycogen synthase kinase-3 beta
5hln_B1e-17224041391Glycogen synthase kinase-3 beta
5hlp_A1e-17224041391Glycogen synthase kinase-3 beta
5hlp_B1e-17224041391Glycogen synthase kinase-3 beta
5kpk_A1e-17224041391Glycogen synthase kinase-3 beta
5kpk_B1e-17224041391Glycogen synthase kinase-3 beta
5kpl_A1e-17224041391Glycogen synthase kinase-3 beta
5kpl_B1e-17224041391Glycogen synthase kinase-3 beta
5kpm_A1e-17224041391Glycogen synthase kinase-3 beta
5kpm_B1e-17224041391Glycogen synthase kinase-3 beta
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G09130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0596210.0AB059621.1 Oryza sativa OSKgamma mRNA for shaggy-related protein kinase gamma, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643997.10.0PREDICTED: shaggy-related protein kinase alpha
RefseqXP_006643998.10.0PREDICTED: shaggy-related protein kinase alpha
RefseqXP_015610903.10.0shaggy-related protein kinase alpha
SwissprotP511390.0MSK3_MEDSA; Glycogen synthase kinase-3 homolog MsK-3
TrEMBLA0A0D9UZ490.0A0A0D9UZ49_9ORYZ; Uncharacterized protein
STRINGLPERR01G09130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-30C3H family protein
Publications ? help Back to Top
  1. Pay A, et al.
    The MsK family of alfalfa protein kinase genes encodes homologues of shaggy/glycogen synthase kinase-3 and shows differential expression patterns in plant organs and development.
    Plant J., 1993. 3(6): p. 847-56
    [PMID:8401615]