PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G09020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GeBP | ||||||||
Protein Properties | Length: 589aa MW: 62991.4 Da PI: 8.372 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 87.7 | 1.5e-27 | 75 | 181 | 2 | 96 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.........aksgkepsfske 83 lfqrlw++e e+++L+G++df++++g+ +++ d+ fy+ +++++sf+++ksqlveK+rrLKkK++ + ++ g ++f+++ LPERR01G09020.1 75 LFQRLWTDEEELLILRGFLDFTTRRGTkfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRVCAARmaaaaanaqGGGGAAFAFRSA 168 79************************98867778***********************************999988777654444578899**** PP DUF573 84 hdqkifelskkiW 96 h+ i+++++ iW LPERR01G09020.1 169 HEGAIYDVARHIW 181 ************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.7E-25 | 76 | 181 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAAAEPAATY SGEEDDEGTD SDGSNPDHAA APLDPPPPVP DASVTPPPPA PEPTTGGAIP 60 PQPGSGTTAE DSRRLFQRLW TDEEELLILR GFLDFTTRRG TKFASHQYDT GPFYDEIRRR 120 LSFDFTKSQL VEKLRRLKKK YRVCAARMAA AAANAQGGGG AAFAFRSAHE GAIYDVARHI 180 WPPALKRGDG AASDEDDINP AATTTPGAME DGFGGGVPAP ASTPTPRGRG GRRVRRRTAQ 240 EPDAPAMGFT LPALNSTDGA HQEPVVAAME YSIPQIADLP LVSEPAPVPV NADGASEEAV 300 RSILSPLLKE LISSVAVAGQ TGTELGLGIG FGGLGCADIS GVNFGTASMN PGVPSIDKWR 360 QQQILELEVY LKRIELVREQ VTAALEDLRS CLLDDAFSPR ISLFVASGWW RRRPHAAAVA 420 AIGREVAAAV RRWARRGARG RARRARQRAR GRARRARRAL LADLLPSLLQ FLLGLLAGVL 480 LLLLLGLVIL HGDYACGEAF LLQLAHDAHR VDSPDHRHII AGEMGRHTLE RGNELTAEVN 540 SVTAMAPLAG TSSESLSFDS TKIQLVEKLC RLKKKYRVCA ARKAAATNA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 443 | 453 | RARQRARGRAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G09020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644705.2 | 1e-141 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A0D9UZ36 | 0.0 | A0A0D9UZ36_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G09020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-38 | DNA-binding storekeeper protein-related transcriptional regulator |