PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G09020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 589aa    MW: 62991.4 Da    PI: 8.372
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G09020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.71.5e-2775181296
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.........aksgkepsfske 83 
                      lfqrlw++e e+++L+G++df++++g+   +++ d+  fy+ +++++sf+++ksqlveK+rrLKkK++ + ++            g  ++f+++
  LPERR01G09020.1  75 LFQRLWTDEEELLILRGFLDFTTRRGTkfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRVCAARmaaaaanaqGGGGAAFAFRSA 168
                      79************************98867778***********************************999988777654444578899**** PP

           DUF573  84 hdqkifelskkiW 96 
                      h+  i+++++ iW
  LPERR01G09020.1 169 HEGAIYDVARHIW 181
                      ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-2576181IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAAAEPAATY SGEEDDEGTD SDGSNPDHAA APLDPPPPVP DASVTPPPPA PEPTTGGAIP  60
PQPGSGTTAE DSRRLFQRLW TDEEELLILR GFLDFTTRRG TKFASHQYDT GPFYDEIRRR  120
LSFDFTKSQL VEKLRRLKKK YRVCAARMAA AAANAQGGGG AAFAFRSAHE GAIYDVARHI  180
WPPALKRGDG AASDEDDINP AATTTPGAME DGFGGGVPAP ASTPTPRGRG GRRVRRRTAQ  240
EPDAPAMGFT LPALNSTDGA HQEPVVAAME YSIPQIADLP LVSEPAPVPV NADGASEEAV  300
RSILSPLLKE LISSVAVAGQ TGTELGLGIG FGGLGCADIS GVNFGTASMN PGVPSIDKWR  360
QQQILELEVY LKRIELVREQ VTAALEDLRS CLLDDAFSPR ISLFVASGWW RRRPHAAAVA  420
AIGREVAAAV RRWARRGARG RARRARQRAR GRARRARRAL LADLLPSLLQ FLLGLLAGVL  480
LLLLLGLVIL HGDYACGEAF LLQLAHDAHR VDSPDHRHII AGEMGRHTLE RGNELTAEVN  540
SVTAMAPLAG TSSESLSFDS TKIQLVEKLC RLKKKYRVCA ARKAAATNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443453RARQRARGRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G09020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.21e-141probable transcription factor At3g04930
TrEMBLA0A0D9UZ360.0A0A0D9UZ36_9ORYZ; Uncharacterized protein
STRINGLPERR01G09020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-38DNA-binding storekeeper protein-related transcriptional regulator