PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G08840.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 479aa MW: 49659.8 Da PI: 8.8782 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.8e-31 | 193 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ LPERR01G08840.2 193 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 251 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-34 | 177 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-28 | 185 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.505 | 187 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 192 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-27 | 194 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MDGWIGSLRC LRSLSLTRAH VFFLQLAAMQ AELGRMNEEN HRLRGMLAQV TSSYQALQMH 60 LVALMQQRPQ MMPPTQPQPP PAHQDGKADG AVVPRQFLDL GPSGAGGEAA EEPSNSSTEV 120 GSPRRSSSTG NKDQERRDSP DAPSTAAGWL PGRGMAPQLG GVAGKGHDQQ AQEANMRKAR 180 VSVRARSEAP IIADGCQWRK YGQKMAKGNP CPRAYYRCTM ATGCPVRKQV QRCAEDRSIL 240 ITTYEGTHNH PLPPAAMAMA STTSAAASML LSGSMPSADG AAAGLMSSNF LARTVLPCSS 300 SMATISASAP FPTVTLDLTH APQPGAPPNA AVPLNVARPP APAQFQVPLP GGGVAPAFAV 360 PPQVLYNQSK FSGLQMSSDS VAADAQFAAH PRPPMGVQLP GTLSDTVSAA AAAITADPNF 420 TVALAAAITS IIGGQHAAAA AAGNSNANNN NANAANTTSN TNNTSSNNTT SNNTNSETQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-23 | 179 | 255 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G08840.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676928 | 0.0 | AY676928.1 Oryza sativa (indica cultivar-group) transcription factor OsWRKY99 (OsWRKY99) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622141.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Refseq | XP_015622142.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-116 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D9UZ14 | 0.0 | A0A0D9UZ14_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G08840.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 3e-97 | WRKY family protein |