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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR01G08470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
LBD |
| Protein Properties |
Length: 229aa MW: 24323.4 Da PI: 9.7302 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR01G08470.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 102 | 5.2e-32 | 6 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93
aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae
LPERR01G08470.1 6 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNALLRAE 99
7**********************************************9977766***************************************9 PP
DUF260 94 lallke 99
a+l++
LPERR01G08470.1 100 NAALRR 105
998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MTGGGACAVC KHQRRKCEPN CELAAYFPAN RMNDFRALHL VFGVANLTKL IKANATEAAR 60
RRAAETLTWE ARWRERDPSE GCYREVSCLR RDNALLRAEN AALRRHADQC SFCGAARHAS 120
SATTLQHQQQ LLHVTGRPPP PHNAGNGSIG GFAGGGYNGV MSSVRAPPQH AQALPATAAA 180
QTLTGGFVAQ DERYRVVSVC PAAAAANGGA MARSGATVRG QGGDCREKS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003201 | 1e-133 | AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12. |
| GenBank | AP014957 | 1e-133 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 1e-133 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
