PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G08450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 491aa    MW: 50947.8 Da    PI: 8.7254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G08450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-066587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cgk F r  nL+ H r H
  LPERR01G08450.1 65 FVCEICGKGFQRDQNLQLHRRGH 87
                     89*******************88 PP
2zf-C2H212.80.00036141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  LPERR01G08450.1 141 WKCDKCSKRYAVQSDWKAHSKTC 163
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.39E-66487No hitNo description
SMARTSM003550.0126587IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-56587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355260106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.39E-6136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASSEAASGA GACISNPFAP LANQQQHEHP PPPPAKKKRN LPGTPDPEAE VIALSPRTLM  60
ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WKLRQRSGKE PRKRVYVCPE KSCVHHNPAR  120
ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD  180
SFITHRAFCD ALAEETARMN AAAASGGVAA ACGQGGYLIP AARPGMVMMP PGGGGGEQMK  240
AMGQNQMMLG DVCGGHVGGG GLSLWGGAEG LPLPLQLPSM GGHIANGVVP PQLYADLFAA  300
AGSGAPPPPQ FDAAQLSWLY GNGKMASSNA SELTSAATAA KEADSLFSNQ QHAKPASSAP  360
TDMSATALLQ KAAQIGAVTS AAAMPQMSPF EHTAKSGGGG ATASPASADE CGIKFDGGAA  420
LFAASQLHNA SLGVGGAMGE LAGNVHYDVL SAVRHAGLKD GGGGGVGREE TRDFLGVGVQ  480
ALCSPSIHGW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35137201367Zinc finger protein JACKDAW
5b3h_F2e-35137201367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G08450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074680.0AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634949.10.0zinc finger protein NUTCRACKER
SwissprotQ9FFH31e-131IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A0D9UYW20.0A0A0D9UYW2_9ORYZ; Uncharacterized protein
STRINGLPERR01G08450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]