PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07860.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 460aa    MW: 51321.6 Da    PI: 6.2028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.4e-14128204183
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k++++s+v +  +l lp +f+++h    k  ++ ++lede+g+s++ ++   +++++  l++ W++F+ ++++k+gD+vv  
  LPERR01G07860.2 128 FVKKMLQSHVVRGFWLGLPADFCNKHlP--K-VDTVIVLEDENGNSYDTTY--LGGKQG--LSARWRGFALDHDIKVGDVVVYI 204
                      89*********************99942..3.3468***************..888888..8999****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-14122208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-18123206IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-20126202No hitNo description
SMARTSM010194.9E-12128228IPR003340B3 DNA binding domain
PfamPF023629.5E-12128204IPR003340B3 DNA binding domain
PROSITE profilePS508639.671128225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDQKTALVYQ RLALLDSSSS SSSSDKDDDF EPGAEAIDYD DMDDVVVVEA APIKMLRPNQ  60
VDGEQRTVPA IPQTCYTQST DLWNGLTNTI KVPVKGQNKC VSAQGCCGSA MERAKELQTK  120
LPAEQPSFVK KMLQSHVVRG FWLGLPADFC NKHLPKVDTV IVLEDENGNS YDTTYLGGKQ  180
GLSARWRGFA LDHDIKVGDV VVYIVREKNL TTTDGVLGLM SLDACKKQKI SKEERSDNAK  240
SGEHPKTTTN SSKGDHNYTQ NLVKEGIDGI RFSDSEIIFD DVTSLSNFNI IVDGLVIDCK  300
FLDHQRMMYY ELCCSQKSFL HNNLLKHLNF KLVVGVIMET INIAEGIRAC KSDTSSHEDF  360
LVWKKTLQSF ELLGMKVAFL LKRVDDLLGL PAQPRDSSEC AKYKEIKLAR SRAGVKMKAL  420
ESKLSSLTDE LKKMDAEMEE MESSVRKHDV ALKKIATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G07860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699237.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0D9UYM30.0A0A0D9UYM3_9ORYZ; Uncharacterized protein
STRINGLPERR01G07860.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]