PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 469aa    MW: 52244.5 Da    PI: 7.4991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.71.9e-35922341128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 
                      lp+G++F+Ptd+el+ e+L++kv+++       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+         
  LPERR01G05530.1  92 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqK 183
                      799************.99******9996775553333333666646**********.555666799******************7566666443 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LPERR01G05530.1 184 GETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 234
                      3778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3987253IPR003441NAC domain
PROSITE profilePS5100534.30692253IPR003441NAC domain
PfamPF023653.8E-1693234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYTSPTLLAL SFALLLLFPY LCSLLYSQLA RRTSTHACEN SLPDACESGM NRGHISSSEL  60
IDAKLEERRI STAKHCPSCG NKLDCKPDWV GLPAGVKFDP TDQELIEHLE AKVREEGSRS  120
HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSKHFFHR PSKAYTTGTR KRRKIQTECD  180
VQKGETRWHK TGKTRPVMVN GRQKGCKKIL VLYTNFGKHR KPEKTNWVMH QYHLGDLEEE  240
REGELVVCKI FYQTQPRQCS WSTTTSDRGG AVAATTAPAA QQEQRRRDSG SGSCSSRDHE  300
AVSATSYPAG YAVAAAVEMQ HLKHAGDHFS FAPFRKSFEE VGIGGDQAPS NHLAGRSEQQ  360
HAGQEQQPHR PLLATTTALP ATAFLISRAT NPVSTIVPPA MQHASVVLDH DQFHQQQQQK  420
LDRRSAGLEE LIMGCTSSST KGETSIPHSQ ETEWPYPSYW TPDNQDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-129023413140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615055.20.0NAC domain-containing protein 75 isoform X3
RefseqXP_015615071.10.0NAC domain-containing protein 75 isoform X6
SwissprotQ9M0F81e-147NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0D9UXS60.0A0A0D9UXS6_9ORYZ; Uncharacterized protein
STRINGLPERR01G05530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-119NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]