 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR01G05270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
WRKY |
| Protein Properties |
Length: 188aa MW: 20378.4 Da PI: 9.0284 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR01G05270.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 93 | 2.2e-29 | 105 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++d ++v++tY g Hnh
LPERR01G05270.1 105 LDDGYKWRKYGKKAVKSSPNPRNYYRCSAPGCGVKKRVERDRHDRRYVVTTYDGVHNHA 163
59********************************************************6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MAASLGLCHD TSSYAYSSLY GFPPLMADDV AAVDYNRSSF FPAAESSYCS HHHHHQLPVV 60
LAGGGGNSNE YYYSVSSSSS SSTAATAAAA SSRIGFRTRS EVEVLDDGYK WRKYGKKAVK 120
SSPNPRNYYR CSAPGCGVKK RVERDRHDRR YVVTTYDGVH NHAANAPTPP WSIVRPAAAA 180
AHSSESSF
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109578 | 6e-74 | AK109578.1 Oryza sativa Japonica Group cDNA clone:002-135-F06, full insert sequence. |
| GenBank | AP002486 | 6e-74 | AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03. |
| GenBank | AP014957 | 6e-74 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | AY341854 | 6e-74 | AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds. |
| GenBank | CT831287 | 6e-74 | CT831287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020N10, full insert sequence. |
| GenBank | HQ858826 | 6e-74 | HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds. |
