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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G04800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 20684.7 Da PI: 10.8185 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.2e-22 | 18 | 63 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k ien+ r+vtfskRr g++KKA+ELS+LC+a vav+ fs+ g+ LPERR01G04800.1 18 KLIENTNSRHVTFSKRRSGLFKKASELSTLCGAAVAVVAFSQAGRP 63 569***************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-28 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.179 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-24 | 11 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.19E-27 | 11 | 85 | No hit | No description |
PRINTS | PR00404 | 4.2E-19 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-24 | 20 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-19 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-19 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MVGPSGRSSK GKKEIEIKLI ENTNSRHVTF SKRRSGLFKK ASELSTLCGA AVAVVAFSQA 60 GRPFAFLSDP TADSLLRRRS SLVVTSCAGG EEVDAMRRAA EEAAARHAAE KARMSDAADK 120 IVAAAAAAGS AMWWESAGVE ALGEAELAVL DVALRRLKGD VCHRLSNAGG VASARRRRRG 180 SSSLSLKLAF CMLHIT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G04800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642334.1 | 8e-42 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D9UXH9 | 1e-135 | A0A0D9UXH9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G04800.1 | 1e-135 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-17 | AGAMOUS-like 29 |