PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G04510.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C3H

Protein Properties

Length: 296aa MW: 31138.2 Da PI: 8.7637

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G04510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6.1e-07	54	79	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C+ f +G C +G+ C+FaHg LPERR01G04510.1 54 YKTRMCDAFVMSGRCMHGEGCTFAHG 79 9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.15E-9	52	84	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-12	52	84	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.04	53	80	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.197	53	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	167	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	167	195	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-5	170	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAGMNGMEMR EGGNNRGRYE SDDVIVISPS PMAWTRGVDP PAPAPAAEEK KLFYKTRMCD 60 AFVMSGRCMH GEGCTFAHGA AEIRSSLTAV AGGWIKPEAA LTPPPAQAVA APQGVQGGGQ 120 EFVARASYGG GGGGGGNLGY NARANYGGGM GHEFIGRANY GGGGGHRSIT KVCFEFRDLG 180 RCRFGASCAF PHVSAAEIRQ GSRLSYSSMT EPPARANMAV TVPRTFISVP SMAPPPLPYV 240 VHNNNGNGGD GYGGLSMMPP AHQPEQEGRK LTRLEILSRK KMSGIYGDWM DGYVSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G04510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645553.1	2e-69	PREDICTED: zinc finger CCCH domain-containing protein 1-like
Swissprot	Q5VR07	2e-58	C3H1_ORYSJ; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A0D9UXE2	0.0	A0A0D9UXE2_9ORYZ; Uncharacterized protein
STRING	LPERR01G04510.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13364	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-07	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]