PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G03590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27880.2 Da PI: 9.7022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.5e-11 | 69 | 113 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P k ++Ka+ L +v+ +k+L LPERR01G03590.1 69 HSEAERRRRERINAHLSTLRRMVPDT-----KQMDKATLLASVVDQVKDL 113 9************************9.....67*********99999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.799 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-13 | 68 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-9 | 69 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-13 | 69 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.5E-4 | 158 | 220 | No hit | No description |
CDD | cd04873 | 2.65E-6 | 158 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAECQPLQLQ EGKKLKELQP YDGCDPSVYR GPILLPRQAS STPPAVLPEM SSSSGSGRSA 60 TEARALKIHS EAERRRRERI NAHLSTLRRM VPDTKQMDKA TLLASVVDQV KDLKRKASEI 120 TKQMPLPPET NEVSIECFTG DAATAIAGNH KTLYIKASIS CDDRPDLIAG LTQAFHGLRL 180 RTVRAEMISL GGRVQHVFIL CKEEGIAGVS LKSLKEAVRQ ALAKVASPEL VYGSSPFHSK 240 RQRILESHCS IMSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 77 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G03590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831568 | 0.0 | CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623162.1 | 1e-152 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A0D9UX25 | 0.0 | A0A0D9UX25_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G03590.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-31 | bHLH family protein |