PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G00310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 383aa    MW: 40820.1 Da    PI: 8.8612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G00310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.8e-052713091255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  LPERR01G00310.1 271 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 309
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.757259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-11269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-5269313No hitNo description
Gene3DG3DSA:4.10.280.108.7E-9273316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASSSSSSSL CDHLSLQDDL PWPSMPFAPA LHAPIGVNHQ WSHQQPLMLD QFSSSYELEP  60
AVSVQNHLAS ASTLSPLQAQ LSTVLMMQEL GFQWSSCALA AADHHTTATS MNNVMEEEQL  120
RNPRSSSSCG TATTYTDMLP PAPPTMAANL DGNVLPSINV SRLQKTAAGG DSPLPQTMLA  180
ASISCKSQAA SSAAASVVGH MSYGPPAHLI HGPSIDDIHS LQIMKRNTQR RGDRNGDATK  240
QRSAVAPSPS SKKPRLESRS SSAILPSFKV RKEKLGDRIA ALQQLVSPFG KTDTASVLME  300
AIGYIKFLQD QVETLSGPYL KSSKNSKKAC RAAQQRKGAS NGGAEAASKL DLRSRGLCLV  360
PLSCTSYVTN ENGVWPPPNF RGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G00310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194931e-139AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643643.11e-174PREDICTED: uncharacterized protein LOC102705754
TrEMBLA0A0D9UVT60.0A0A0D9UVT6_9ORYZ; Uncharacterized protein
STRINGLPERR01G00310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-41bHLH family protein