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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34693.6 Da PI: 6.6338 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.6 | 6.8e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++kv +++ +++ +i evd++k+ePw+Lp k+ +ekewyf++++d+ky+tg r+nrat++gyWkatgkdke+ LPERR01G00270.1 14 LPPGFRFHPTDEEIITFYLTPKVLDSRgFSV-IAIGEVDLNKSEPWELPgKAKMIGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEI 106 79********************999995666.88***************544445899************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ lvg+kktLvfykgrapkg kt+Wvmheyrl LPERR01G00270.1 107 FRHNHLLVGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 **9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-60 | 10 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.198 | 14 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-28 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGEQQQQAER QPDLPPGFRF HPTDEEIITF YLTPKVLDSR GFSVIAIGEV DLNKSEPWEL 60 PGKAKMIGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRHN HLLVGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADGHPAAA AATEPVVVNN SSNNPPMPRH DDWAVCRIFH 180 KSSGIKKPVQ MPVQAPPTTY QQQMNMVAAG IVPVPMQMVP DMQQAMDDFS GGVALQQMNP 240 LMASSSYSTL PAFPGAATGL PMMNPPPPMP QFYQQMEMGG GFMVDDPASG PSSQDAENAG 300 DLSGMDAAMW KY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 1 | 187 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G00270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645428.1 | 1e-132 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLR3 | 6e-79 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0D9UVT2 | 0.0 | A0A0D9UVT2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G00270.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-78 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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