PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G00250.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 312aa    MW: 34942.1 Da    PI: 6.0964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G00250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.58e-5151311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+GfrFhPtdeel+ +yL k++++ ++++  vi+evdiyk++Pw+Lp+++  +e ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk++ +
  LPERR01G00250.1   5 LPAGFRFHPTDEELLLHYLGKRAAAAPCPA-AVIAEVDIYKFNPWELPAMAVFGEAEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPISD 97 
                      799***************************.89***************76667899************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ l g+kk Lvfy+gr pkg+kt+W+mheyrl
  LPERR01G00250.1  98 AGQMLLGVKKALVFYRGRPPKGTKTSWIMHEYRL 131
                      9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-613159IPR003441NAC domain
PROSITE profilePS5100558.6665159IPR003441NAC domain
PfamPF023654.9E-256131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVRLPAGFR FHPTDEELLL HYLGKRAAAA PCPAAVIAEV DIYKFNPWEL PAMAVFGEAE  60
WYFFSPRDRK YPNGARPNRS AGSGYWKATG TDKPISDAGQ MLLGVKKALV FYRGRPPKGT  120
KTSWIMHEYR LAATTAIPAV SSSSSMRLDD LVLCRIYKKA NQQLHYSSPS MDDDDDDQQY  180
AQLPQHQHIK QDESISFRIP RPPSISDYLV DYSAAVSTDQ LFVDNLIPAA ETASLQLGLT  240
PNDDDSSSSR NKRQKMDDYY STSEMTTTLL QTSNHNQRQQ LPASTNCTFI SSMFEPAGQL  300
MPSHSQDDTS II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-72216212171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G00250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028181e-105AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBankAP0149571e-105AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-105CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645427.11e-130PREDICTED: NAC transcription factor 29-like
SwissprotK4BNG77e-83NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0D9UVT00.0A0A0D9UVT0_9ORYZ; Uncharacterized protein
STRINGLPERR01G00250.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.16e-75NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]