PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g43530.1
Common NameLOC107277673, OsJ_36963
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 376aa    MW: 41331 Da    PI: 7.6376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g43530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.72.9e-46351892128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekew.yfFskrdkkyatgkrkn 75 
                        pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk                  +++a eke+ yfF+ r +ky+++ r+n
  LOC_Os12g43530.1  35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgsssssslsTAAAAEKECgYFFCLRGRKYRNSIRPN 126
                       69***************************.99***************7789***9999999888764445677888***************** PP

               NAM  76 ratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       r+t sg+Wkatg dk+++s+           g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  LOC_Os12g43530.1 127 RVTGSGFWKATGIDKPIYSSslaaaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 189
                       *******************877666655554455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.84634214IPR003441NAC domain
SuperFamilySSF1019411.57E-4734214IPR003441NAC domain
PfamPF023657.1E-2336189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP  60
FSIDIIKEID IYKHDPWDLP KVSHGAVALQ GSSSSSSLST AAAAEKECGY FFCLRGRKYR  120
NSIRPNRVTG SGFWKATGID KPIYSSSLAA AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT  180
DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAAASM NKRISHELQH  240
IHHHQQQQFY YHEVVHDGHG HHHRRHLQHY AGSASMAAAA ANIVDVIDHS SDAETTTRSH  300
SHSQSHLVAD IRHRQSPFML DFHAGTASSS SSTAAGWSEV MSFSRDGGSS SGSSWDELGR  360
IMDISTNSAN NNYYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-433621419165NO APICAL MERISTEM PROTEIN
1ut4_B3e-433621419165NO APICAL MERISTEM PROTEIN
1ut7_A3e-433621419165NO APICAL MERISTEM PROTEIN
1ut7_B3e-433621419165NO APICAL MERISTEM PROTEIN
4dul_A3e-433621419165NAC domain-containing protein 19
4dul_B3e-433621419165NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QLR9
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g43530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g43530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139050.0AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619497.10.0NAC domain-containing protein 41 isoform X2
SwissprotQ9SK557e-75NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0E0RKD00.0A0A0E0RKD0_ORYRU; Uncharacterized protein
TrEMBLQ2QLR90.0Q2QLR9_ORYSJ; No apical meristem protein
STRINGORUFI12G21970.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]