PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 35005 Da PI: 10.213 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 169 | 208 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR +i ++f +L++l+P + K + a++L ++++Y+ksLq LOC_Os12g40730.1 169 RRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 208 9******************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.655 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-7 | 168 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.98E-9 | 169 | 212 | No hit | No description |
Pfam | PF00010 | 5.3E-7 | 169 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-12 | 169 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 169 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MWQGGGGGGA SSFDQPPPPV SYHRLSPPPP AMGTTTTTLL PEQPLVDDHH LPAAAAAPPS 60 EEEMAAWLYP IVSGHEVAGG GWRSPEAQDD RRAAPAPEKK QMEKMPAAAS PTTTMNKDET 120 SDDSGERKKK KASSAAGKSK QASPRGCRSS QPYRKSGDSI DELFTKFHRR RFKITERFRT 180 LQRLVPGCDK SNQASTLDQT IQYMKSLQHQ LKAMSVVGSP PALLYPAAVH PQSYMHPPPP 240 PPPVTMPMHP GMVLAAPPPG AAPPPGPPAM VPFGAMLPYP PYPAVLLPPP AAATLYGRPP 300 APAPGVAARR HGSSGGGRIS KSSSSSLCKK L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.69800 | 0.0 | callus| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297729364 | 0.0 | ||||
Expression Atlas | Q2QML8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732535 | 0.0 | AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q2QML8 | 0.0 | Q2QML8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | OGLUM12G19530.1 | 1e-137 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Representative plant | OGRP10440 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-13 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40730.1 |
Publications ? help Back to Top | |||
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