PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 27783.9 Da PI: 10.7071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.1e-14 | 86 | 133 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ahn E+rRR +i ++f +L++l+P + + K + a++L ++++Y+ksLq LOC_Os12g40710.1 86 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 133 8*************************9....89******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-17 | 81 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.037 | 82 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-14 | 86 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 86 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-12 | 86 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-13 | 88 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAAWLYPIVG GHQVAAGGWL SPEAGDDRRA APPAPEKKQM DNMPAVASPT MNKDEASDDS 60 GERKKKKKKA SSAAGKASRH RHAAGAHNLT EKRRRFKITE RFRTLQRLVP GCDNKSNQAS 120 TLDQTIQYMK SLQHQLEATS AVGSPAAAVL YPAAVHPQSY MHPPAPPPPV AGAAAPVTMA 180 PMPAGMVLAA APPGAAPPPG PPATMMPFGA MLPYPPYPEV LLPPPPATLY GRPPAAAPSV 240 AARRHGSTSG GGRISKSSSS SLRKEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 67 | ERKKKKK |
2 | 62 | 68 | RKKKKKK |
3 | 90 | 95 | EKRRRF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.69800 | 1e-94 | callus| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297729364 | 1e-94 | ||||
Expression Atlas | Q2QMM0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732535 | 0.0 | AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619315.1 | 1e-156 | transcription factor APG | ||||
TrEMBL | Q2QMM0 | 0.0 | Q2QMM0_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | OBART12G17960.1 | 1e-122 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 | Representative plant | OGRP10440 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-12 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40710.1 |
Publications ? help Back to Top | |||
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