|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LOC_Os12g40570.2 |
Common Name | OsJ_36751 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
WRKY |
Protein Properties |
Length: 364aa MW: 38532.6 Da PI: 10.4666 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os12g40570.2 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.4 | 2.2e-31 | 297 | 354 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+
LOC_Os12g40570.2 297 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 354
9*************************988****************************7 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGGGGGHAR GRMAGRSRPS AVLREKGFLE SSSGGGQLGM MMSGAATPST SSAAHLRNRI 120 GGGSGVPPDS LRGLDLVSSS SKGGAHQFDP PKLVQPLSVQ FQFGATAHRY PFQQHQHQQK 180 LQAEMFKRSN SGISLKFDSP SATGTMSSAF MSSLSMDGSV ASLEGKPPFH LISGPVASDP 240 VNAHHVPKRR CTGRGEDGSG KCATTGRCHC SKRRKLRIKR SIKVPAISNK IADIPPDEYS 300 WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEGE HNHTRLPTQS 360 AQT*
|
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.19013 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK070648 | 0.0 | AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence. |