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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os12g40570.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
WRKY |
Protein Properties |
Length: 366aa MW: 38551.7 Da PI: 10.2433 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os12g40570.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 87.4 | 1.2e-27 | 297 | 350 | 3 | 55 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55
D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYe++
LOC_Os12g40570.1 297 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEEN 350
9*************************988**********************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGGGGGHAR GRMAGRSRPS AVLREKGFLE SSSGGGQLGM MMSGAATPST SSAAHLRNRI 120 GGGSGVPPDS LRGLDLVSSS SKGGAHQFDP PKLVQPLSVQ FQFGATAHRY PFQQHQHQQK 180 LQAEMFKRSN SGISLKFDSP SATGTMSSAF MSSLSMDGSV ASLEGKPPFH LISGPVASDP 240 VNAHHVPKRR CTGRGEDGSG KCATTGRCHC SKRRKLRIKR SIKVPAISNK IADIPPDEYS 300 WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEEN AEAPSFCSGT 360 VGPVM*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.19013 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070648 | 0.0 | AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence. |