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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os12g31430.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 303aa MW: 32166.3 Da PI: 10.2408 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os12g31430.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 22.7 | 1.7e-07 | 166 | 210 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ r RR+ri s+ +eL +l+P a ++ +s ae+L+ A ++++ Lq
LOC_Os12g31430.1 166 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 210
567899999**************8....577***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFAYD PPAHGAAALD 60 DVLAPLPGAD KRPRERGVVA DGRSFRRAGA ALPAPPTELV TRFVPTPPPL PPVQQQQQQQ 120 RWELPDAVFV RGAGAAEAKK GGAAASHDDH DDGRHHHHHN QAVQSAAARE RRRRISSKTA 180 ELSRLIPGAA RMNSTAEMLQ AAARHVRLLQ AQVGMLALIH SSGEAKAASS MAASREHHQM 240 MMMRALLASG GVQERLAGEG RCLVPTSLVR AIADDDAMAT SNPALSRDVN RFKDSLDQQQ 300 QQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL831808 | 0.0 | AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
GenBank | BX255875 | 0.0 | BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |