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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os12g07610.1 |
Common Name | Os12g0175000, OSNPB_120175000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
MYB |
Protein Properties |
Length: 379aa MW: 42844 Da PI: 5.8606 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os12g07610.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 131 | 177 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd +lv++v+q+G + W++I +++ gR +kqc++rw+++l
LOC_Os12g07610.1 131 KGHWTVEEDRKLVKLVEQFGLKKWSLIGGMLP-GRVGKQCRERWFNHL 177
789*****************************.*************97 PP
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2 | Myb_DNA-binding | 52.6 | 1e-16 | 183 | 225 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+
LOC_Os12g07610.1 183 KDTWSEEEDMVLIQIHKEVGNR-WAEIAKCLP-GRTENSIKNHWN 225
679*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MDFSCFNPQP AISHGIPFDS FLLQDELHHH ADLDHPFEAE GITVHGSELE GGSVLPFATL 60 HDLDHEFFRR GSRKDFIDNA SSIFLLNPKT EVSHLVRDVQ VGAFGAYEMN GRLISRNKAS 120 RKGIKKADAV KGHWTVEEDR KLVKLVEQFG LKKWSLIGGM LPGRVGKQCR ERWFNHLRPN 180 IKKDTWSEEE DMVLIQIHKE VGNRWAEIAK CLPGRTENSI KNHWNATKRR QFARRRNRST 240 SKSGSTVLQN YIKSLAISPQ ESQMNNERSE SNPSDMMITQ GTPCCFDGNN CSQSHTSEEN 300 IVPSCGDFAA EMWSGLFDTK EDEEDEAQYL LYDMDTHVDM NCIFSNMDYG SNIEPGLASV 360 VKAECSAESW AVNLKETD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL732638 | 0.0 | AL732638.6 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0010K22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |