PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 164aa MW: 18233.3 Da PI: 5.8787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g47620.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F+++ L H +H LOC_Os11g47620.1 71 FECRTCGRRFPSHQALGGHRTSH 93 89*************99998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.1E-10	70	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.092	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.325	71	98	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-7	71	133	No hit	No description
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.3E-9	111	135	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.099	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020104	anatomy	leaf sheath

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDQQEDYTSD LQLELEEEED DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR 60 RRDEEAAAAA FECRTCGRRF PSHQALGGHR TSHLRPTTNK RRPGPSKPLI HACEVCGLGF 120 QMGQALGGHM RRHRPRNIDL GHKQIVMPEI RPSSSLQLLD LFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.94347	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q53NL7

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g47620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g47620

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134045	0.0	AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBank	AK243307	0.0	AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616383.1	1e-117	zinc finger protein ZAT1
TrEMBL	Q53NL7	1e-115	Q53NL7_ORYSJ; Os11g0702300 protein
STRING	OS11T0702300-00	1e-116	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6730	26	50
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g47620.1
Entrez Gene	9269083

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]