PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g47460.1 | ||||||||
Common Name | LOC4351184, MYBAS1, Os11g0700500, OsJ_34832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27226.1 Da PI: 8.6705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ +a+ g++Rt+k+c++rw +yl LOC_Os11g47460.1 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 64 | 108 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ LOC_Os11g47460.1 64 GRMSPKEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.263 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-28 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.581 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG 60 LKHGRMSPKE EHLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERRGDMS 120 PSSSSSSLVY QSCLLDTVPI ISMDGGDIHD DRSCMARVLK STQSVMDGYT MDQIWKEIEA 180 PGAPSLLGID EGKDKACSNL PCPLLTSTMS DYSCPEVFWK IDNEETRMLA TQSGYGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10174 | 0.0 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53NK6 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g47460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g47460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111626 | 0.0 | AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence. | |||
GenBank | DQ075260 | 0.0 | DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617959.1 | 1e-178 | myb-related protein MYBAS1 isoform X2 | ||||
Swissprot | Q53NK6 | 1e-179 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A0E0RC89 | 1e-176 | A0A0E0RC89_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G25190.1 | 1e-177 | (Oryza rufipogon) | ||||
STRING | OS11T0700500-01 | 1e-177 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-75 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g47460.1 |
Entrez Gene | 4351184 |
Publications ? help Back to Top | |||
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