PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 286aa MW: 32783.4 Da PI: 5.801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g45740.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l++++ +G g+W++ ar g++Rt+k+c++rw++yl LOC_Os11g45740.1 31 RGPWTVDEDLTLINYISDHGEGRWNALARAAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP
2	Myb_DNA-binding	57.4	3.4e-18	84	127	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ LOC_Os11g45740.1 84 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 127 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.194	26	78	IPR017930	Myb domain
SuperFamily	SSF46689	1.14E-30	29	125	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-14	30	80	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	31	78	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-23	32	85	IPR009057	Homeodomain-like
CDD	cd00167	5.88E-10	33	78	No hit	No description
PROSITE profile	PS51294	24.451	79	133	IPR017930	Myb domain
SMART	SM00717	3.3E-16	83	131	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	84	127	IPR001005	SANT/Myb domain
CDD	cd00167	3.29E-11	86	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-25	86	132	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020104	anatomy	leaf sheath

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLINYISDHG EGRWNALARA 60 AGLKRTGKSC RLRWLNYLRP DVKRGNFTAE EQLLILDLHS RWGNRWSKIA QHLPGRTDNE 120 IKNYWRTRVQ KHAKQLNCDV NSKRFKDAMK YLWMPRLAER IHARAGAVDD SGDYSNNDLS 180 CVSGVTMATV ANCFDGSPSM VTSSSSDSFT SESQDLKKIN LHVHGDDEKM NSEDWMQEVD 240 HEFWSTEIQP NNEQFQDQQL NGWVQGFSEG LSETLWSLED IWKMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-26	23	131	19	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.96736	0.0	leaf\| seed

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QZJ8

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g45740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g45740

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY026332	0.0	AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618000.1	0.0	transcription factor JAMYB
Swissprot	Q2QZJ8	0.0	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	A0A0E0RC24	0.0	A0A0E0RC24_ORYRU; Uncharacterized protein
STRING	ORUFI11G24630.1	0.0	(Oryza rufipogon)
STRING	OS11T0684000-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	4e-80	myb domain protein 112

Link Out ? help Back to Top
Phytozome	LOC_Os11g45740.1
Entrez Gene	4351131

Publications ? help Back to Top
Lee MW,Qi M,Yang Y A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death. Mol. Plant Microbe Interact., 2001. 14(4): p. 527-35 [PMID:11310740] Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]