PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g38870.1 | ||||||||
Common Name | LOC4350864, Os11g0601700, OsJ_34429, OSNPB_110601700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 279aa MW: 30071.2 Da PI: 8.5165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2.1e-05 | 47 | 93 | 1 | 51 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + + LOC_Os11g38870.1 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 93 678899*********************885....23444555666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-8 | 44 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-11 | 44 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00107 | 44 | 101 | No hit | No description |
PROSITE profile | PS50888 | 10.823 | 46 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0025 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MPQVRNQNLG MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD 60 QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE 120 NNELQEENIM LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG 180 NGPNLAMVHP TNTLSPLHNQ HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST 240 PATSSGLTDS LPGQLRLSLP QSSQEENSSG SKKGRKKG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27243 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978035 | 0.0 | ||||
Expression Atlas | Q2R1K8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g38870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g38870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068017 | 0.0 | AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617819.1 | 0.0 | transcription factor BHLH062-like isoform X1 | ||||
TrEMBL | Q2R1K8 | 0.0 | Q2R1K8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | OS11T0601700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12959 | 21 | 24 |
Representative plant | OGRP14679 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g38870.1 |
Entrez Gene | 4350864 |
Publications ? help Back to Top | |||
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