PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g19060.1
Common NameLOC4350315, Os11g0295900, OSNPB_110295900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 560aa    MW: 59883.9 Da    PI: 6.5133
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g19060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.4e-13167226155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+ ++++gr++A+++d  +   g  ++ ++++ g ++ +e+Aa+a++ a++k++g
  LOC_Os11g19060.1 167 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVNAGGYDKEEKAARAYDLAALKYWG 226
                       57*******************666664478446*************************98 PP
2AP251.23.1e-16269320155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  LOC_Os11g19060.1 269 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 320
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-10167226IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15167236IPR016177DNA-binding domain
CDDcd000184.52E-19167236No hitNo description
PROSITE profilePS5103217.57168234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12168235IPR001471AP2/ERF domain
SMARTSM003808.6E-25168240IPR001471AP2/ERF domain
PRINTSPR003672.6E-6169180IPR001471AP2/ERF domain
PfamPF008473.9E-11269320IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18269330IPR016177DNA-binding domain
CDDcd000182.91E-24269330No hitNo description
PROSITE profilePS5103218.834270328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17270329IPR001471AP2/ERF domain
SMARTSM003806.0E-33270334IPR001471AP2/ERF domain
PRINTSPR003672.6E-6310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ EWGSAYEGGG TVAAAGGEET AAPKLEDFLG  60
MQVQQETAAA AAGHGRGGSS SVVGLSMIKN WLRSQPPPAV VGGEDAMMAL AVSTSASPPV  120
DATVPACISP DGMGSKAADG GGAAEAAAAA AAQRMKAAMD TFGQRTSIYR GVTKHRWTGR  180
YEAHLWDNSC RREGQTRKGR QVNAGGYDKE EKAARAYDLA ALKYWGTTTT TNFPVSNYEK  240
ELDEMKHMNR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FGTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIIES SNLPIGTGTT RRLKDSSDHT  360
DNVMDINVNT EPNNVVSSHF TNGVGNYGSQ HYGYNGWSPI SMQPIPSQYA NGQPRAWLKQ  420
EQDSSVVTAA QNLHNLHHFS SLGYTHNFFQ QSDVPDVTGF VDAPSRSSDS YSFRYNGTNG  480
FHGLPGGISY AMPVATAVDQ GQGIHGYGED GVAGIDTTHD LYGSRNVYYL SEGSLLADVE  540
KEGDYGQSVG GNSWVLPTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.880470.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976116650.0
Expression AtlasA0A0N7KSS8-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g19060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g19060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-127BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0N7KSS80.0A0A0N7KSS8_ORYSJ; Os11g0295900 protein
STRINGOS11T0295900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-118AP2 family protein