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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LOC_Os11g07460.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
TCP |
| Protein Properties |
Length: 481aa MW: 49566.1 Da PI: 8.5636 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LOC_Os11g07460.1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 156.8 | 1.2e-48 | 146 | 302 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93
ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+as+sss++aa++
LOC_Os11g07460.1 146 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPF 238
789******************************************************************9999******************** PP
TCP 94 aakskksqksaasalnlakesr....................akarararertrekmriknkln 137
++ ++++q++ a++l ++++++ a + +r+r+r++++ +++++++
LOC_Os11g07460.1 239 HHLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 302
*******************9999********************************999998876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS 60
RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG 120
GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT 180
RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH 240
LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS 300
RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG 360
AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH 420
EGQSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPVIYLN HENPIKVAEN 480
*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120539 | 0.0 | AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
