PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06770.2
Common NameLOC4349881, Os11g0168500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 319aa    MW: 32430.8 Da    PI: 5.417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06770.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20130179255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  LOC_Os11g06770.2 130 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDDAALRFRG 179
                       8********.**********64....55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-13130179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32130188IPR001471AP2/ERF domain
SMARTSM003807.9E-36130193IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22130188IPR016177DNA-binding domain
PROSITE profilePS5103225.515130187IPR001471AP2/ERF domain
PRINTSPR003677.2E-12131142IPR001471AP2/ERF domain
CDDcd000182.17E-15136189No hitNo description
PRINTSPR003677.2E-12153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCGGGKVASP PGPRLPRLAG AGGEEEEEEA AAGMLSRHGQ AREMSVMVSA LARVVAGGGG  60
GEAEEWWPPA YGAAPLPPST SPASHEHAAA MAAGQYAPAT SSAMASPREQ ASSPSSGDAA  120
GGGGGGGRKR YRGVRQRPWG KWAAEIRDPV KAARVWLGTF DTAEAAARAY DDAALRFRGC  180
RAKLNFPEDA ALLPPPPPPP APAPAPPQSQ GMVGVGEEYS EYARFLQGAG EPPHFLEQIM  240
EDSPRPSTAA GASSSSSGQS SFPLFYSFAG HELGGNEANL ARPPESGGAG GDGGRGSSPP  300
VTWPGYGWGA PPPWDPSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22129187463ATERF1
3gcc_A1e-22129187463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132GRKRYRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.744850.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166310360.0
Expression AtlasQ53JG2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06770.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205270.0AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478120.0AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.10.0ethylene-responsive transcription factor ERF110
TrEMBLQ53JG20.0Q53JG2_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI11G04200.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-23ethylene response factor 110
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]