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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os11g06410.1 |
Common Name | LOC4349866, Os11g0163500, OSNPB_110163500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 484aa MW: 55062.9 Da PI: 6.7117 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os11g06410.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 85.6 | 6.1e-27 | 162 | 258 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82
+Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++
LOC_Os11g06410.1 162 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLL 254
7*********************8744455667777**********************************************55********** PP
trihelix 83 dqle 86
d+++
LOC_Os11g06410.1 255 DHMD 258
**97 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 3.8E-20 | 160 | 283 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MSILLWLSHV LLKLHYLRLY SCASSCTPVS ILYGTNKKLK CLGDRFGEME GSNPPGNMTQ 60 GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ IPGNFTIPMD RVTEPDNISD GVQLGQHGKI 120 AHHHHHHRHH SKNHGSDEEE HDMNEDAADG KDKKGSPWHR MKWTDSMVKL LITAVSYTGE 180 DPGADLGGGR RNYSMMQKKG KWKAISKVMG ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG 240 RGTACNVVEN HSLLDHMDIS EKMKEDARKI LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ 300 SLQLALRCKE DNDFMRHASG DAELDDDQSE DSDYEENEEE HRAVDTNIRG PSMHKRMWHV 360 VDHGDVGFVT SCSNDGSGRS DPYDVLDINK PFPDGCDLAL VQKDLALKAA EIQKHRLQIE 420 TKAVQLAKQR LKWEMFRKNK DLELEKLALE NEQMMLQNKR FELDLRHKEL ELEIKIKGNA 480 NHP*
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Expression -- UniGene
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UniGene ID |
E-value |
Expressed in |
Os.87768 | 0.0 | callus| flower| leaf| panicle| seed| vegetative meristem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK101154 | 0.0 | AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-92 | sequence-specific DNA binding transcription factors |