PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 295aa MW: 31246.9 Da PI: 6.5128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g05614.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.8	2.3e-41	18	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+ LOC_Os11g05614.1 18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAlageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 110 69*************************99***********84455333335569***************************99 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ LOC_Os11g05614.1 111 CVISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149 9998868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-45	15	181	IPR003441	NAC domain
PROSITE profile	PS51005	46.099	17	182	IPR003441	NAC domain
Pfam	PF02365	9.4E-23	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025281	anatomy	pollen
PO:0001059	developmental stage	J bicellular pollen stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MATTRSGVGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP 60 SQLAALAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV 120 IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA MLHPMAPPRL RNELGVCRVY 180 ISTGTLRSFD RRPLDNQAAA PTQQQVMPSL TAAAAVNTNL CGGGGGVVFA GAQGDSSRDC 240 SSSSGSRELA GGADGSEDDA IDWNSLISSA TADDLGFNTV VGFDPSIVGS WPQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-29	6	180	2	163	NO APICAL MERISTEM PROTEIN
4dul_A	3e-29	6	180	2	163	NAC domain-containing protein 19
4dul_B	3e-29	6	180	2	163	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.54623	0.0	callus\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32991486	0.0
Expression Atlas	Q53QG7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g05614.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g05614

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109939	0.0	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615861.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0R4E1	0.0	A0A0E0R4E1_ORYRU; Uncharacterized protein
TrEMBL	Q53QG7	0.0	Q53QG7_ORYSJ; NAC-domain containing protein 90, putative, expressed
STRING	ORUFI11G03420.1	0.0	(Oryza rufipogon)
STRING	OS11T0154500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	8e-65	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	LOC_Os11g05614.1
Entrez Gene	4349814

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]