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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os11g04590.1 |
Common Name | LOC107276448, OsJ_32921 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
GRAS |
Protein Properties |
Length: 461aa MW: 50420.4 Da PI: 7.3424 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os11g04590.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 290.7 | 4e-89 | 3 | 434 | 19 | 374 |
GRAS 19 laqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
+a+++Lar l a+ +g p +Rla ++ La+rl+r v+ + +al ps + ++ aa++ f+e+sP++k+++++ N+aI+eave
LOC_Os11g04590.1 3 KATRCLARATGLaaAAAAGdGPRKRLAVAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVE 93
6888888888775445555479***********************99995444443..34555578899************************ PP
GRAS 108 geervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL... 194
+e+ vH++ ++ +q+ QW+ Ll++L Rpegpp +R+T+v++ + e l +++e ++ Aeelg++f+f+ v+ +ledl++++L
LOC_Os11g04590.1 94 NESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMEELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLrnv 181
**********86679****************9988789*******....***************************.7999****99998666 PP
GRAS 195 .rvkpgEalaVnlvlqlhrll....................................................................desv 218
++k+gEal+V++ lqlhrll + ++
LOC_Os11g04590.1 182 lEIKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmavnscpsssgggsvqykdddpyrspatpltfvsppvstphfQTPA 274
67889*****************************************************************************99865555555 PP
GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres........eerikvErellgreivnvvacega 303
+l ++L++v+ lsPk++vv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s +er+ vEr+++g+ei+ v+ ga
LOC_Os11g04590.1 275 AL----ASFLSAVRALSPKILVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTSaasrlwspDERAQVERVVVGEEIKGVLLRDGA 363
55....55*********************************************99988888888999999*********************** PP
GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+rre h +l++W +r+e+aGF+ vpls+ a k+ + ++r+++ + + +e g+l+l+W++rpL+s+SaWr
LOC_Os11g04590.1 364 HRREWHDRLRQWAARMEMAGFTGVPLSYAAIKKGNDMVRRCGLRRCENKECGGCLLLCWSSRPLYSISAWR 434
******************************************887999999*******************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MEKATRCLAR ATGLAAAAAA GDGPRKRLAV AMVDCLARRL LRPVQAITDA LIDPSVYLDR 60 RSVRAARRGF FELSPFPKVA FVVGNRAIVE AVENESLVHV VGMSGPFTQP CQWIQLLHEL 120 RRRPEGPPRV VRLTVVHDDG ELLAKMEELV SDEAEELGME FQFHGVVGQL EDLDFSNLRN 180 VLEIKSGEAL VVSCTLQLHR LLAADDDAMY SSRSAHLNQM ASIAQLQHMA VNSCPSSSGG 240 GSVQYKDDDP YRSPATPLTF VSPPVSTPHF QTPAALASFL SAVRALSPKI LVVAEQDADH 300 NGVSFRKRFC EALHHYAAVF DSLDAAAATT SAASRLWSPD ERAQVERVVV GEEIKGVLLR 360 DGAHRREWHD RLRQWAARME MAGFTGVPLS YAAIKKGNDM VRRCGLRRCE NKECGGCLLL 420 CWSSRPLYSI SAWRPAASRG SGSGSERSEY VHVGAEPDDR *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC151480 | 0.0 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. |
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |