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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g04570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 855aa MW: 94267.7 Da PI: 7.67 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 182.6 | 2.8e-56 | 71 | 350 | 111 | 345 |
GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp... 198 vHi+D++ s ++ QWp Ll+ + Rp+g+p+l +T++++ +++ l +++ L+k Ae+lgv+f+f v rle+l++++Lr LOC_Os11g04570.1 71 VVHIVDLSCSaaHPWQWPKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-VIGRLETLDFSNLRSTFqik 158 59*****8653389***************************....9**************************.799**********5444455 PP GRAS 199 .gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhn 249 g a+a++++lq+hrll s +++ ++L++++ l+P+++ ++eq+adhn LOC_Os11g04570.1 159 fGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMLIMEQDADHN 251 5*******************************************************98666777778899*********************** PP GRAS 250 sesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 + F +rf e l+yy+alfd+++a ++++ +er v+r++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a +a LOC_Os11g04570.1 252 TLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVDRMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREAYV 344 **********************77654444456****************************************************99998876 PP GRAS 340 llrkvk 345 kv+ LOC_Os11g04570.1 345 WQLKVQ 350 555555 PP | |||||||
2 | GRAS | 354.3 | 1.9e-108 | 406 | 843 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL++cA vs+g++ +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ +l++al +s++s + + a++ ++v P+lk+ LOC_Os11g04570.1 406 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLILGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 497 679*******************************9*****************************888887544.44446778899******** PP GRAS 94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ ske l +++ L+k Ae++++ f+fn+ v+ LOC_Os11g04570.1 498 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 585 ************************966899****************************....9**************************.799 PP GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll........................................................... 214 +l+++++++L v++gEalaV++vlqlhrll LOC_Os11g04570.1 586 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaa 678 9**999998843335667*************************************************************************** PP GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 +++++++ + ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegae LOC_Os11g04570.1 679 ataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAE 770 *98555555556999*********************************************999.68889************************ PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 r+erhe++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr LOC_Os11g04570.1 771 RVERHERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 843 *****************************************8888****884345678**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.064 | 1 | 359 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-54 | 71 | 350 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 50.331 | 379 | 820 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.5E-106 | 406 | 843 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MSASLHRPAL ASLLQIEAGG CGVLGVFAPG PRLPCRGYHP CRSSSTLGSA SLTPRRWHIS 60 PPGLRIRDVL VVHIVDLSCS AAHPWQWPKL LDDFHGRPGG APELYLTVLH DDNDFLADMQ 120 SLLSKKAESL GVSFHFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN 180 LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI 240 MLIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV DRMILREEIK 300 NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EAYVWQLKVQ ADNLRLCCTD 360 RGMFQDDMLS SATSSPASSV YSPSPSPSNG SWVQELSHDQ QSVRLIGLLY QCAAEVSAGS 420 FDRANLCLEH ITQLASLDAP HALQRLAAVF ADALARKLLN LILGLSRALL SSANSADAHL 480 VPVARRHMFD VLPFLKLAYL TTNHAILEAM EGERFVHVVD FSGPAANPVQ WIALFHAFRG 540 RREGPPHLRI TAVHDSKEFL ANMAAVLSKE AEAFDIAFQF NAVEAKLDEM DFDALRHDLG 600 VRSGEALAVS VVLQLHRLLA VDDGRRHAAA GCLTPVQIIA RSSPRSFGEL LERELNTRLQ 660 LSPDASVVSS LSPHSPAAAT AAHPTTSTPK LGSFLSAVRS LSPKIMVMTE QEANHNGGAF 720 QERFDEALNY YASLFDCLQR SAAAAAERAR VERVLLGEEI RGVVACEGAE RVERHERARQ 780 WAARMEAAGM ERVGLSYSGA MEARKLLQSC GWAGPYEVRH DAGGHGFFFC WHKRPLYAVT 840 AWRPAASRRG HTRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-29 | 435 | 843 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57564 | 0.0 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990446 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g04570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g04570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123527 | 0.0 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. | |||
GenBank | AC151480 | 0.0 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616659.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | Q2RAQ8 | 0.0 | Q2RAQ8_ORYSJ; GRAS family transcription factor containing protein, expressed | ||||
STRING | ORGLA12G0021500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Representative plant | OGRP2564 | 14 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 5e-97 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g04570.1 |