PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ZF-HD

Protein Properties

Length: 106aa MW: 10860 Da PI: 8.2955

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g03420.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.7	5.9e-33	31	87	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eC++NhAas+GghavDGC+Efm+s g+egtaaal CaACgCHR+FHRreve LOC_Os11g03420.1 31 KVVRYRECQRNHAASIGGHAVDGCREFMAS-GAEGTAAALLCAACGCHRSFHRREVEA 87 579************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-12	31	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.8E-31	33	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-27	34	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.698	35	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005737	Cellular Component	cytoplasm
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm
PO:0007042	developmental stage	whole plant fruit formation stage
PO:0007633	developmental stage	endosperm development stage

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MGPQQDRSAA KPYANGSTAA AAAAGRKENN KVVRYRECQR NHAASIGGHA VDGCREFMAS 60 GAEGTAAALL CAACGCHRSF HRREVEAAAA ECDCSSDTSS GTGRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.16784	1e-180	leaf\| panicle\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2RB28

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g03420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g03420

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123525	1e-178	AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBank	AK063715	1e-178	AK063715.1 Oryza sativa Japonica Group cDNA clone:001-120-C04, full insert sequence.
GenBank	AP014967	1e-178	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	1e-178	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBank	CU405610	1e-178	CU405610.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C006D05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615851.1	9e-70	mini zinc finger protein 1
Swissprot	B8BIU8	8e-71	MIF1_ORYSI; Mini zinc finger protein 1
Swissprot	Q2RB28	8e-71	MIF1_ORYSJ; Mini zinc finger protein 1
TrEMBL	A0A0D3HHP1	2e-68	A0A0D3HHP1_9ORYZ; Uncharacterized protein
TrEMBL	I1QXA2	2e-68	I1QXA2_ORYGL; Uncharacterized protein
STRING	OS11T0128300-01	3e-69	(Oryza sativa)
STRING	ORGLA11G0014400.1	3e-69	(Oryza glaberrima)
STRING	OBART11G01670.1	3e-69	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-19	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	LOC_Os11g03420.1
Entrez Gene	4349655

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Hu W,dePamphilis CW,Ma H Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. J Integr Plant Biol, 2008. 50(8): p. 1031-45 [PMID:18713354]