PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 157aa MW: 17404.9 Da PI: 6.931

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g01550.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.6	5e-44	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ + LOC_Os11g01550.1 9 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQ 101 7****************************************************************************************** PP DUF260 94 lallkee 100 lal+++e LOC_Os11g01550.1 102 LALAHAE 108 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009037	anatomy	lemma
PO:0025281	anatomy	pollen
PO:0001015	developmental stage	K second mitotic division stage
PO:0001047	developmental stage	lemma development stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAGSGSGTPC ASCKLLRRRC TSECVFAPYF PAEEAQRFAM VHRVFGASNV SKMLLDVPPP 60 QRPDAVSSLV YEANARMRDP VYGCVAAISF LQNQVSQLQM QLALAHAETA ALQLQLQQQH 120 QDQDDHHHQQ CILENAAAHH QLMLQEAFLK KESMWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-47	5	108	7	110	LOB family transfactor Ramosa2.1
5ly0_B	7e-47	5	108	7	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.56072	0.0	callus\| leaf\| panicle

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QYU3

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Function -- GeneRIF ? help Back to Top
LBD12-1 plays an important role in SAM size determination by regulating the expression of AGO10 under stress conditions. [LBD12-1] [PMID: 27895202]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g01550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g01550

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241761	0.0	AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000494	0.0	BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	BX000497	0.0	BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618081.1	1e-113	LOB domain-containing protein 12
Refseq	XP_015618082.1	1e-113	LOB domain-containing protein 12
Refseq	XP_015618083.1	1e-113	LOB domain-containing protein 12
Refseq	XP_025877106.1	1e-113	LOB domain-containing protein 12
Refseq	XP_025877964.1	1e-113	LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A2ZAN0	1e-112	A2ZAN0_ORYSI; Uncharacterized protein
TrEMBL	Q2QYU3	1e-112	Q2QYU3_ORYSJ; LOB domain protein 12, putative, expressed
STRING	OS11T0106900-01	1e-112	(Oryza sativa)
STRING	OS12T0106200-01	1e-112	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-51	LBD family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g01550.1
Entrez Gene	4349560 \| 4351265

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Ma W, et al. The LBD12-1 Transcription Factor Suppresses Apical Meristem Size by Repressing Argonaute 10 Expression. Plant Physiol., 2017. 173(1): p. 801-811 [PMID:27895202]