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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os10g41460.1 |
Common Name | LOC4349408, Os10g0564200, OSJNBa0027P10.21, OSNPB_100564200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 337aa MW: 35636 Da PI: 9.1903 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os10g41460.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 72.1 | 9.6e-23 | 52 | 141 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++ + ++s +qC++k+e+l+kry+++++++ +r+++ ++p+f l+
LOC_Os10g41460.1 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 141
8*************************************99998888899**************************98443..47****9886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAVSSGG AGGSGRRLPP PCWTHEETLA 60 LIEAYRDRWE GLRKGNLRAS DWDDVAGAVT ARCGRFPTAT HKSGVQCRHK IEKLRKRYRA 120 ERARAAGRSK GPKWPFFPLL HDLAGGGAPD PSPNPIIKIK SKGPAAAAAS PSPASPSPVS 180 SPSSEEDEEE EAAADAGRSR SLHGLISNGG SGSGLRFTIP KASRSKPVAQ REQPTAIKVE 240 KSEEDAEAEA MAEVASALRA VGDKFLRMEE RRLEISLQIE KERMESEMKR TQTLLDAQQL 300 FVEAFLGKQQ HHHHHHKKAK VISAAAAAAT AAMDED*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC084763 | 0.0 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. |
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |